selected publications
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letter
- Mutually reinforcing patterning mechanisms. Nature Reviews Molecular Cell Biology. 533-. 2011-01-01
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article
- Early effects of gene duplication on the robustness and phenotypic variability of gene regulatory networks. BMC Bioinformatics. 23:-. 2022-01-01
- On the effects of the modularity of gene regulatory networks on phenotypic variability and its association with robustness. BioSystems. 212:-. 2022-01-01
- Recombination facilitates genetic assimilation of new traits in gene regulatory networks. Evolution and Development. 23:459-473. 2021-01-01
- On the role of sparseness in the evolution of modularity in gene regulatory networks. PLoS Computational Biology. 14:-. 2018-01-01
- Selection for distinct gene expression properties favours the evolution of mutational robustness in gene regulatory networks. Journal of Evolutionary Biology. 29:2321-2333. 2016-01-01
- Tetramer formation in Arabidopsis MADS domain proteins: Analysis of a protein-protein interaction network. BMC Systems Biology. 8:-. 2014-01-01
- Dynamic network-based epistasis analysis: Boolean examples. Frontiers in Plant Science. 2:-. 2011-01-01
- Phenotypic plasticity can facilitate adaptive evolution in gene regulatory circuits. BMC Evolutionary Biology. 11:-. 2011-01-01
- Phenotypic robustness can increase phenotypic variability after nongenetic perturbations in gene regulatory circuits. Journal of Evolutionary Biology. 24:1284-1297. 2011-01-01
- Specialization can drive the evolution of modularity. PLoS Computational Biology. 6:-. 2010-01-01
- Floral morphogenesis: Stochastic explorations of a gene network epigenetic landscape. PLoS ONE. 3:-. 2008-01-01
- Interlinked nonlinear subnetworks underlie the formation of robust cellular patterns in Arabidopsis epidermis: A dynamic spatial model. BMC Systems Biology. 2:-. 2008-01-01
- Equivalent genetic regulatory networks in different contexts recover contrasting spatial cell patterns that resemble those in Arabidopsis root and leaf epidermis: A dynamic model. International Journal of Developmental Biology. 51:139-155. 2007-01-01
- Phenotypic evolution is restrained by complex developmental processes. HFSP Journal. 1:99-103. 2007-01-01
- From genes to flower patterns and evolution: Dynamic models of gene regulatory networks. Journal of Plant Growth Regulation. 25:278-289. 2006-01-01
- A gene regulatory network model for cell-fate determination during Arabidopsis thaliana flower development that is robust and recovers experimental gene expression profiles. Plant Cell. 16:2923-2939. 2004-01-01
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chapter
- Gene regulatory network models: A dynamic and integrative approach to development. Practical Systems Biology. 113-139. 2008-01-01
- MADS-box genes underground becoming mainstream: plant root developmental mechanisms. New Phytologist. 1143-1158. 2019-01-01
- Gene regulatory network models for plant development. Current Opinion in Plant Biology. 83-91. 2007-01-01