Molecular and biochemical techniques for deciphering p53-mdm2 regulatory mechanisms
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The p53 and Mouse double minute 2 (MDM2) proteins are hubs in extensive networks of interactions with multiple partners and functions. Intrinsically disordered regions help to adopt function-specific structural conformations in response to ligand binding and post-translational modifications. Different techniques have been used to dissect interactions of the p53-MDM2 pathway, in vitro, in vivo, and in situ each having its own advantages and disadvantages. This review uses the p53-MDM2 to show how different techniques can be employed, illustrating how a combination of in vitro and in vivo techniques is highly recommended to study the spatio-temporal location and dynamics of interactions, and to address their regulation mechanisms and functions. By using well-established techniques in combination with more recent advances, it is possible to rapidly decipher complex mechanisms, such as the p53 regulatory pathway, and to demonstrate how protein and nucleotide ligands in combination with post-translational modifications, result in inter-allosteric and intra-allosteric interactions that govern the activity of the protein complexes and their specific roles in oncogenesis. This promotes elegant therapeutic strategies that exploit protein dynamics to target specific interactions. © 2020, MDPI AG. All rights reserved.
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ATM; DNA damage response; MDM2; MDMX; P53; P53 mRNA; Post-translational modification; Protein-protein interactions; Protein-RNA interactions ATM protein; folic acid; glutathione reductase; immunoglobulin enhancer binding protein; intrinsically disordered protein; messenger RNA; mouse double minute 2 homolog; nucleotide; proteasome; protein p53; transcription factor GAL4; adult; allosterism; apoptosis; autofluorescence; bioluminescence; bioluminescence resonance energy transfer; carcinogenesis; cell cycle arrest; cell interaction; chromatin immunoprecipitation; confocal microscopy; crystal structure; DNA damage; DNA damage response; drug combination; enzyme activity; enzyme immunoassay; enzyme linked immunosorbent assay; flow cytometry; fluorescence microscopy; fluorescence resonance energy transfer; gene silencing; human; hydrogen bond; immunofluorescence; immunoprecipitation; in vitro study; in vivo study; leukemia; ligand binding; lymphoma cell; mass spectrometry; middle aged; myelooptic neuropathy; nanofabrication; oxidative stress; phage display; protein function; protein interaction; protein misfolding; protein phosphorylation; protein processing; protein protein interaction; protein RNA binding; proteomics; real time reverse transcription polymerase chain reaction; Review; Saccharomyces cerevisiae; signal transduction; structure activity relation; ubiquitination; Western blotting
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