Prevalence of drug resistance mutations in protease, reverse transcriptase, and integrase genes of north central Mexico HIV isolates
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This study set out to determine the frequency of antiretroviral drug resistance mutations in treatment-naive subjects of the north central Mexican state of San Luis Potosí. Mexican studies of antiretroviral drug resistance mutations have focused mainly on large metropolitan areas and border towns subjected to intense international migrations. This study set forth to describe the frequency of these mutations in a Mexican region less subjected to such migratory influences and more representative of smaller Mexican cities. Thirty-eight full-length pol sequences spanning the protease, reverse-Transcriptase, and integrase-encoding regions were obtained from 42 treatment-naive human immunodeficiency virus (HIV)-infected subjects. Most exhibited subtype B homology, but CRF02-AG was also detected. Evidence of APOBEC3 hypermutation was seen in two samples. Calibrated population analysis revealed a surveillance drug resistance mutation prevalence of 4.9%25 for protease inhibitors, of 2.7%25 for nucleoside reverse transcriptase inhibitors, of 8.1%25 for non-nucleoside reverse transcriptase inhibitors, and an overall prevalence of 9.5%25. This corresponds to an intermediate level of transmitted drug resistance according to the World Health Organization. The identification of integrase mutations suggests that transmitted drug mutations are being imported, as inhibitors targeting integrase have not been widely used in Mexico. Our results provide a greater understanding of HIV diversity in Mexico and highlight the way internal migrations allow HIV mutations and genetic features to permeate regions less subjected to international migrations. The implications of these findings will become more evident as Mexico hosts increased repatriations of migrants in the coming years. © 2018, Mary Ann Liebert, Inc.
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Acquired immunodeficiency syndrome; Antiretrovirals; Human immunodeficiency virus; Human migrations integrase; nonnucleoside reverse transcriptase inhibitor; proteinase; proteinase inhibitor; RNA directed DNA polymerase; RNA directed DNA polymerase inhibitor; Human immunodeficiency virus proteinase; integrase; RNA directed DNA polymerase; adolescent; adult; Article; clinical article; female; gene mutation; human; Human immunodeficiency virus infected patient; Human immunodeficiency virus infection; male; Mexico; population; prevalence; priority journal; sequence analysis; virus isolation; world health organization; antiviral resistance; DNA sequence; drug effect; enzymology; gene frequency; genetics; Human immunodeficiency virus; Human immunodeficiency virus infection; missense mutation; virology; young adult; Adolescent; Adult; Drug Resistance, Viral; Female; Gene Frequency; HIV; HIV Infections; HIV Integrase; HIV Protease; HIV Reverse Transcriptase; Humans; Male; Mexico; Mutation, Missense; Sequence Analysis, DNA; Young Adult
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